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List of Contributors | |
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Bayesian Inference for Causal Effects | |
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Causal inference primitives | |
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A brief history of the potential outcomes framework | |
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Models for the underlying data - Bayesian inference | |
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Complications | |
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Model Selection and Hypothesis Testing based on Objective Probabilities and Bayes Factors | |
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Introduction | |
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Objective Bayesian model selection methods | |
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More general training samples | |
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Prior probabilities | |
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Conclusions | |
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Acknowledgements | |
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Bayesian Model Checking and Model Diagnostics | |
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Introduction | |
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Model checking overview | |
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Approaches for checking if the model is consistent with the data | |
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Posterior predictive model checking techniques | |
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Application 1 | |
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Application 2 | |
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Conclusions | |
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Bayesian Nonparametric Modeling and Data Analysis: An Introduction | |
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Introduction to Bayesian nonparametrics | |
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Probability measures on spaces of probability measures | |
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Illustrations | |
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Concluding remarks | |
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Some Bayesian Nonparametric Models | |
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Introduction | |
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Random distribution functions | |
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Mixtures of Dirichlet processes | |
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Random variate generation for NTR processes | |
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Sub-classes of random distribution functions | |
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Hazard rate processes | |
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Polya trees | |
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Beyond NTR processes and Polya trees | |
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Bayesian Modeling in the Wavelet Domain | |
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Introduction | |
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Bayes and wavelets | |
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Other problems | |
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Acknowledgements | |
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Bayesian Methods for Function Estimation | |
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Introduction | |
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Priors on infinite-dimensional spaces | |
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Consistency and rates of convergence | |
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Estimation of cumulative probability distribution | |
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Density estimation | |
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Regression function estimation | |
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Spectral density estimation | |
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Estimation of transition density | |
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Concluding remarks | |
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MCMC Methods to Estimate Bayesian Parametric Models | |
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Motivation | |
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Bayesian ingredients | |
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Bayesian recipe | |
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How can the Bayesian pie burn | |
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MCMC methods | |
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The perfect Bayesian pie: How to avoid "burn-in" issues | |
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Conclusions | |
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Bayesian Computation: From Posterior Densities to Bayes Factors, Marginal Likelihoods, and Posterior Model Probabilities | |
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Introduction | |
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Posterior density estimation | |
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Marginal posterior densities for generalized linear models | |
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Savage-Dickey density ratio | |
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Computing marginal likelihoods | |
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Computing posterior model probabilities via informative priors | |
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Concluding remarks | |
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Bayesian Modelling and Inference on Mixtures of Distributions | |
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Introduction | |
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The finite mixture framework | |
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The mixture conundrum | |
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Inference for mixture models with known number of components | |
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Inference for mixture models with unknown number of components | |
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Extensions to the mixture framework | |
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Acknowledgements | |
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Variable Selection and Covariance Selection in Multivariate Regression Models | |
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Introduction | |
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Model description | |
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Sampling scheme | |
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Real data | |
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Simulation study | |
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Summary | |
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Dynamic Models | |
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Model structure, inference and practical aspects | |
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Markov Chain Monte Carlo | |
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Sequential Monte Carlo | |
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Extensions | |
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Acknowledgements | |
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Elliptical Measurement Error Models - A Bayesian Approach | |
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Introduction | |
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Elliptical measurement error models | |
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Diffuse prior distribution for the incidental parameters | |
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Dependent elliptical MEM | |
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Independent elliptical MEM | |
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Application | |
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Acknowledgements | |
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Bayesian Sensitivity Analysis in Skew-Elliptical Models | |
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Introduction | |
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Definitions and properties of skew-elliptical distributions | |
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Testing of asymmetry in linear regression model | |
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Simulation results | |
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Conclusions | |
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Acknowledgements | |
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Bayesian Methods for DNA Microarray Data Analysis | |
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Introduction | |
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Review of microarray technology | |
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Statistical analysis of microarray data | |
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Bayesian models for gene selection | |
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Differential gene expression analysis | |
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Bayesian clustering methods | |
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Regression for grossly overparametrized models | |
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Concluding remarks | |
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Acknowledgements | |
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Bayesian Biostatistics | |
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Introduction | |
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Correlated and longitudinal data | |
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Time to event data | |
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Nonlinear modeling | |
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Model averaging | |
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Bioinformatics | |
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Discussion | |
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Innovative Bayesian Methods for Biostatistics and Epidemiology | |
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Introduction | |
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Meta-analysis and multicentre studies | |
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Spatial analysis for environmental epidemiology | |
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Adjusting for mismeasured variables | |
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Adjusting for missing data | |
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Sensitivity analysis for unobserved confounding | |
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Ecological inference | |
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Bayesian model averaging | |
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Survival analysis | |
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Case-control analysis | |
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Bayesian applications in health economics | |
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Discussion | |
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Modeling and Analysis for Categorical Response Data | |
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Introduction | |
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Binary responses | |
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Ordinal response data | |
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Sequential ordinal model | |
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Multivariate responses | |
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Longitudinal binary responses | |
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Longitudinal multivariate responses | |
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Conclusion | |
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Bayesian Methods and Simulation-Based Computation for Contingency Tables | |
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Motivation for Bayesian methods | |
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Advances in simulation-based Bayesian calculation | |
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Early Bayesian analyses of categorical data | |
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Bayesian smoothing of contingency tables | |
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Bayesian interaction analysis | |
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Bayesian tests of equiprobability and independence | |
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Bayes factors for GLM's with application to log-linear models | |
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Use of BIC in sociological applications | |
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Bayesian model search for loglinear models | |
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The future | |
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Teaching Bayesian Thought to Nonstatisticians | |
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Introduction | |
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A brief literature review | |
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Commonalities across groups in teaching Bayesian methods | |
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Motivation and conceptual explanations: One solution | |
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Conceptual mapping | |
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Active learning and repetition | |
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Assessment | |
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Conclusions | |
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Subject Index | |