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| Preface | |
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| Foreword | |
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| Concept of genome and genomics: Zhanjiang Liu | |
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| Marking Genomes | |
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| Restriction fragment length polymorphism (RFLP) | |
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| Randomly amplified polymorphic DNA (RAPD) | |
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| Amplified fragment length polymorphism (AFLP) | |
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| Microsatellite markers and assessment of marker utility | |
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| Single nucleotide polymorphism (SNP) | |
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| Allozyme and mitochondrial markers | |
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| Individual-based genotype methods in aquaculture: Pierre Duchesne and Louis Bernatchez | |
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| Application of DNA markers for population genetic analysis | |
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| Mapping Genomes | |
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| Linkage mapping in aquaculture species | |
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| Detection and analysis of quantitative trait loci (QTLs) for economic traits in aquatic species | |
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| Marker Assisted Selection for Aquaculture Species: | |
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| Construction of large-insert bacterial clone libraries and their applications | |
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| Bacterial artificial chromosome libraries and BAC-based physical mapping of aquaculture genomes | |
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| Physical characterization of aquaculture genomes through BAC end sequencing | |
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| Genomescape: characterizing the repeat structure of the genome | |
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| Genomic analyses using fluorescence in situ hybridization | |
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| Radiation hybrid mapping in aquatic species | |
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| Comparative Genomics and Positional Cloning | |
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| Analysis of Genome Expression and Function | |
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| Transcriptome characterization through the analysis of expressed sequence | |
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| Microarray fundamentals: Basic principles and application in aquaculture | |
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| Salmonid DNA microarrays and other tools for functional genomics research | |
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| Computational challenges for the analysis of large datasets related to aquatic environmental genomics | |
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| Functional genomics | |
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| Preparing for Genome Sequencing | |
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| DNA sequencing technologies | |
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| Sequencing the genome | |
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| Bioinformatics | |
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| Dealing with the Daunting Genomes of Aquaculture Species | |
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| Dealing with duplicated genomes of teleosts | |
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| Bivalve genomics: complications, challenges, and future perspectives | |
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