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Algorithms on Strings, Trees and Sequences Computer Science and Computational Biology

ISBN-10: 0521585198
ISBN-13: 9780521585194
Edition: 1997
Authors: Dan Gusfield
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Description: String algorithms are a traditional area of study in computer science and, in recent years, their importance has grown dramatically. Gusfield also discusses biological problems that can be cast as string problems, and methods of solving them.

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Book details

List price: $99.99
Copyright year: 1997
Publisher: Cambridge University Press
Publication date: 5/28/1997
Binding: Hardcover
Pages: 556
Size: 7.25" wide x 10.75" long x 1.50" tall
Weight: 1.848
Language: English

String algorithms are a traditional area of study in computer science and, in recent years, their importance has grown dramatically. Gusfield also discusses biological problems that can be cast as string problems, and methods of solving them.

Exact String Matching: The Fundamental String Problem
Exact matching: fundamental preprocessing and first algorithms
Exact matching: classical comparison-based methods
Exact matching: a deeper look at classical methods
Semi-numerical string matching
Suffix Trees And Their Uses
Introduction to suffix trees
Linear time construction of suffix trees
First applications of suffix trees
Constant time lowest common ancestor retrieval
More applications of suffix trees
Inexact Matching, Sequence Alignment, And Dynamic Programming
The importance of (sub)sequence comparison in molecular biology
Core string edits, alignments, and dynamic programming
Refining core string edits and alignments
Extending the core problems
Multiple string comparison: the Holy Grail
Sequence database and their uses: the motherlode
Currents, Cousins And Cameos
Maps, mapping, sequencing and superstrings
Strings and evolutionary trees
Three short topics
Models of genome-level mutations

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