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| Introduction to Environmental Microbiology | |
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| Introduction to Environmental Microbiology | |
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| Neighborhoods and Community Involvement: No Microbe Is an Island | |
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| Prokaryotic Diversity: Form, Ecophysiology | |
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| General Methodology | |
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| Overview: General Methodology | |
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| Analytical Imaging and Microscopy Techniques | |
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| Cultivation of Bacteria and Fungi | |
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| Cultivation of Algae and Protozoa | |
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| Cultivation and Assay of Animal Viruses | |
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| Cultivation of Microbial Consortia and Communities | |
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| Lipid Analyses for Viable Microbial Biomass, Community Composition, Metabolic Status, and In Situ Metabolism | |
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| Physiological Profiling of Microbial Communities | |
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| Molecular Approaches for the Measurement of Density, Diversity, and Phylogeny | |
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| Phylogenetic and Genomic Analysis | |
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| Bioreporters | |
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| Ecology at Long-Term Research Sites: Integrating Microbes and Ecosystems | |
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| Quality Assurance | |
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| Issues of Study Design and Statistical Analysis for Environmental Microbiology | |
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| Water Microbiology in Public Health | |
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| Overview of Water Microbiology as It Relates to Public Health | |
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| Waterborne Transmission of Infectious Agents | |
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| Detection of Microorganisms in Environmental Freshwaters and Drinking Waters | |
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| Detection of Protozoan Parasites in Source and Finished Drinking Water | |
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| Microbial Indicators of Marine Recreational Water Quality | |
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| Detection of Viruses in Environmental Waters, Sewage, and Sewage Sludges | |
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| Detection of Bacterial Pathogens in Wastewater and Sludge | |
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| Detection of Pathogenic Bacteria | |
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| Control of Microorganisms in Source Water and Drinking Water | |
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| Assessing the Efficiency of Wastewater Treatment | |
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| Modeling the Fate of Microorganisms in Water, Wastewater, and Soil | |
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| Estimating the Risk of Infectious Disease Associated with Pathogens in Drinking Water | |
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| Toxic Photosynthetic Microbes | |
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| Aquatic Environments | |
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| An Overview of Methodologies in Aquatic Microbial Ecology | |
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| Cultivating Microorganisms from Dilute Aquatic Environments: Melding Traditional Methodology with New Cultivation Techniques and Molecular Methods | |
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| Primary Productivity and Producers | |
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| Bacterial Secondary Productivity | |
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| Community Structure: Bacteria and Archaea | |
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| Viral Community Structure | |
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| Protistan Community Structure | |
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| Decomposition and Fungal Community Structure in Aquatic Environments | |
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| Bacterial Organic Carbon Cycling in Aquatic Environments | |
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| Environmental Genomics of C1 Metabolism | |
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| Sulfur Cycling | |
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| Nitrogen Cycling in Aquatic Environments | |
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| The Marine Phosphorus Cycle | |
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| Microbial Metal Cycling in Aquatic Environments | |
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| Biofilms on Living Surfaces | |
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| Extreme High-Pressure Marine Environments | |
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| Soil, Rhizosphere, and Phyllosphere | |
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| Introduction and Overview: Soil, Rhizosphere, and Phyllosphere | |
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| Surface Soil Microbial Sampling Methods | |
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| Application of Phylogenetic Techniques in Studies of Soil Microbial Communities | |
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| Sampling Viruses from Soil | |
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| Isolation, Culture, and Detection of Arbuscular Mycorrhizal Fungi | |
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| Isolation, In Planta Detection, and Uses of Endophytic Bacteria for Plant Protection | |
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| Methods of Soil Microbial Community Analysis | |
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| Microarrays: Design and Use for Agricultural and Environmental Applications | |
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| PCR: Agricultural and Environmental Applications for Soil Microbes | |
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| Quantification of Nitrogen Transformations | |
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| Quantifying the Metabolic Activity of Soil- and Plant-Associated Microbes | |
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| Soil Enzymes: Linking Proteomics and Ecological Processes | |
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| Use of Immunofluorescence Microscopy and Fluorescence In Situ Hybridization Combined with CMEIAS and Other Image Analysis Tools To Study the Autecology of Soil- and Plant-Associated Microbes | |
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| Reporter Gene Systems Useful in Evaluating In Situ Gene Expression by Soil- and Plant-Associated Bacteria | |
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| Identifying Microorganisms Involved in Specific In Situ Functions: Experimental Design Considerations for rRNA Gene-Based Population Studies and Sequence-Selective PCR Assays | |
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| Mobile Gene Elements in Environmental Microbial Communities | |
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| Microorganisms Associated with Soil Arthropods | |
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| Lipid Fingerprinting of Soil Microbial Communities | |
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| Subsurface and Landfills | |
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| Overview of Issues in Subsurface and Landfill Microbiology | |
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| Drilling, Coring, and Sampling Subsurface Environments | |
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| Anaerobic Decomposition of Refuse in Landfills and Methane Oxidation in Landfill Covers | |
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| Biogeochemistry of Aquifer Systems | |
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| Determining the Terminal Electron-Accepting Reaction in the Saturated Subsurface | |
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| Transport of Microorganisms in the Terrestrial Subsurface: In Situ and Laboratory Methods | |
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| Oil Field Microbiology | |
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| Placement of Drinking Water Wells and Their Protection | |
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| Aerobiology | |
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| Introduction to Aerobiology | |
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| Sampling for Airborne Microorganisms | |
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| Analysis of Bioaerosol Samples | |
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| Fate and Transport of Microorganisms in Air | |
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| Airborne Fungi and Mycotoxins | |
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| Airborne Bacteria and Endotoxin | |
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| Legionellae and Legionnaires' Disease | |
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| Airborne Viruses | |
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| Aerobiology of Agricultural Pathogens | |
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| Biotransformation and Biodegradation | |
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| Overview: Biotransformation and Biodegradation | |
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| Functional Gene Arrays for Microbial Community Analysis | |
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| Methods for Soil Metagenomics: Extraction and Cloning of Soil DNA | |
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| Using Genetic Algorithms To Optimize Functions of Microbial Ecosystems | |
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| Metagenomic Methods for the Identification of Active Microorganisms and Genes in Biodegradation Processes | |
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| Proteomic Analysis of Extracellular Enzymes Produced by Wood-Degrading Fungi | |
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| Current Progress in the Application of Mycoremediation to Soil Cleanup | |
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| Fungal Solid-State Fermentation Systems for Bioconversion of Lignocellulosic Biomass: Process Protocol and Applications | |
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| Characterization of Microeukaryota in Natural Environments | |
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| Methods Useful in Assessing Biological and Chemical Activity of Low-Molecular-Weight Brown Rot Fungal Metabolites | |
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| Techniques for Studying Uncultured and Cultured Magnetotactic Bacteria | |
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| Growth of Electrode-Reducing Bacteria | |
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| Microbially Mediated Anaerobic Iron (II) Oxidation at Circumneutral pH | |
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| Isolation, Enumeration, Growth, and Preservation of Acidophilic Prokaryotes | |
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| Molecular Techniques for the Study of Toxic Metal Resistance Mechanisms in Bacteria | |
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| Synchrotron-Based Techniques for Monitoring Metal Transformations | |
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| Techniques for Studying Microbial Transformations of Metals and Radionuclides | |
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| Arsenate-Respiring Bacteria | |
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| Biotransformations of Manganese | |
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| Microbial Fe (III) Reduction: Ecological and Physiological Considerations | |
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