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Phylogenetic Trees Made Easy 3e A How-to Manual

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ISBN-10: 0878933107

ISBN-13: 9780878933105

Edition: 3rd 2008 (Revised)

Authors: Barry G. Hall

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Barry G. Hall helps beginners get started in creating phylogenetic trees from protein or nucleic acid sequence data.
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Book details

Edition: 3rd
Copyright year: 2008
Publisher: Oxford University Press, Incorporated
Binding: Paperback
Pages: 238
Size: 6.75" wide x 9.00" long x 0.50" tall
Weight: 1.034
Language: English

BARRY G. HALL is Director of the Bellingham Research Institute, Adjunct Professor of Genomics and Bioinformatics at the Allegheny-Singer Research Institute's Center for Genomic Sciences, and Professor Emeritus of Biology, University of Rochester, USA. He was a founding member of the Society for Molecular Biology and Evolution and has been Editor-in-Chief of the journal Molecular Biology and Evolution , and on the Editorial Boards of Genetica , the Journal of Molecular Evolution , and the Journal of Bacteriology .

Read me first!
Tutorial : create a tree!
Acquiring and aligning the sequences
Interlude I : major methods for estimating phylogenetic trees
Neighbor-joining trees
Drawing phylogenetic trees
Parsimony
Maximum likelihood
Bayesian inference of trees with MrBayes
Interlude II : which method should you use?
Reconstructing ancestral sequences
Detecting adaptive evolution
Working with various computer platforms
File formats and their interconversion
Additional programs